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In order to stay active, functional, and able to…
Date Recorded
February 28, 2024 Health Topics (The Scope Radio)
Bone Health
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Internal Medicine Grand rounds - New Insights…
Speaker
Katalin Susztak, MD, PhD Date Recorded
September 03, 2020 Science Topics
Health Sciences
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Internal Medicine grand rounds
Speaker
Ross Levine Date Recorded
October 17, 2019
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Neurology Grand Rounds - August 23, 2017
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Christopher R. Jones, MD, PhD Date Recorded
August 23, 2017
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Speaker
Bryce Christensen Date Recorded
October 20, 2016
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Lynn Jorde, PhD Date Recorded
September 22, 2016
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Hereditary Hemorrhagic Telangiectasia (HHT) is an…
Date Recorded
June 08, 2016 Health Topics (The Scope Radio)
Family Health and Wellness Transcription
Interviewer: What are the symptoms of HHT and what should you do about it? We'll talk about that next on The Scope.
Announcer: Health tips, medical news, research and more for a happier, healthier life. From University of Utah Health Sciences, this is The Scope.
Interviewer: Nine out of 10 people with the genetic disorder HHT are still undiagnosed. What makes it so difficult is it can have multiple and seemingly unrelated symptoms. If not treated properly, it can have dire consequences. Jamie McDonald is a licensed genetic counselor and Co-Director of the HHT Center of Excellence at University Utah Health Care. I'm not going to attempt to say it. I'd like you to say it and maybe I'll try afterward. What does HHT stand for?
Jamie: It stands for hereditary hemorrhagic telangiectasia. Hereditary, of course, means it runs in families. Hemorrhagic means that it is associated with bleeding. And the word "telangiectasia" that indeed, one has to hear about 50 times to be able to say, refers to a very specific type of blood vessel abnormality. It is, in particular, a blood vessel that is abnormal because an artery is directly connected to a vein rather than connected via a capillary network, which is the normal thing.
Interviewer: And different places, different people have it in different places and different quantities of them? Some people might have a few, some people might have a lot?
Jamie: Exactly. That is the case that there is huge variability and surprising to even many physicians that don't see a lot of this disorder, it's variable even within the same family. So it would be reasonable to expect that if a parent had certain manifestations of this disorder or a certain severity of different manifestations, then maybe it would be likely that their child would as well. It's absolutely not the case. It's very variable from person to person, even within the same family.
Interviewer: And it is a genetic issue, as we've established before so it's hereditary. Why are we just now hearing about it?
Jamie: The fact that 1 in 5000 people are affected rather than the frequency with which people have diabetes or congestive heart failure has decreased the chance that people are going to become aware of it.
Interviewer: So it's something that affects even 1 in 5000 doesn't sound like a lot, it can turn out to be quite a few.
Jamie: Absolutely. And those of us that see many HHT families and sort of collect them, if you will, because we focus on this disorder, feel that 1 in 5000 probably is a significant underrepresentation. When I see families and take a three to four generation family history, as I do, all of a sudden, after having asked the right questions about those family members, I have in front of me on my family tree a pedigree of five people in my patient's family that clearly have HHT but haven't been diagnosed because the pieces of the puzzle haven't been put together.
Interviewer: Let's talk about some of those pieces. What are some of the symptoms that people might have? I've heard nosebleeds commonly referred to. Is that one of the main ones?
Jamie: Absolutely. It is the main one. About 95% of people with HHT will have recurring nosebleeds by the time they're adults, say, 40 years of age. But recurring may mean one every two weeks or it may mean two an hour. So it's extremely variable and you can imagine that if somebody has one nosebleed every two weeks that stops in a minute's time, they may not have even reported that to their physician. So it's the cardinal, most common feature, but not the feature we're most worried about.
The features we're most worried about are the larger, abnormal blood vessels we call AVMs or arterial venous malformations, that can occur in the lung and the brain and liver and lay hidden unless you go looking for the because you've been tipped off that they might be there based on the person's history and family history of nosebleeds. And then, the second thing that can actually be seen on the outside of the body, before we start doing fancy imaging tests to look inside the body, are little tiny telangiectasias or what show up as red spots on the hands, mouth, face of the body.
Interviewer: And are those red spots there all the time?
Jamie: They're there all the time. They don't come and go like a rash would, for example. They're there all the time. Although, people tend to develop more of then with age. At birth, a baby that's born with HHT, for example, because, after all, it's hereditary, a baby gets HHT by inheriting it from a mom or dad. So it's there at birth in some fashion or another. But, usually, the telangiectasias on the skin don't show up until adulthood.
So one of our key concerns as we work our way through families where many people aren't diagnosed yet is people will develop an AVM in their brain in this disorder, usually, years before they actually develop the nosebleeds and red spots on the outside. So the underlying features of HHT that we're most concerned about don't jump out at doctors when they see these patients in their clinics.
Interviewer: The symptoms might not show up so what are some of the damages of this?
Jamie: The significant damage is the baby that has a brain bleed or brain hemorrhage from a ruptured AVM at three years of age before they've had a chance to develop the nosebleeds that begin at average age 11, 12 or red spots on the outside on the skin, which develop average age 20s or 30s. The brain bleed can occur in a young child from an AVM in the brain or a 30-year-old can have a stroke or a brain abscess due to a lung AVM. The blood isn't being filtered out of clots each time it circulates the body and passes through the lungs.
If blood goes through an AVM in the lung and the clot isn't filtered out and that blood then goes to the brain, it's a stroke. So strokes, both of hemorrhagic nature and of a clot blocking off a blood vessel nature, are both risk factors for people with HHT that haven't ben appropriately diagnosed and screened.
Interviewer: So what do you do? How do you find out if you have it if you're not showing the symptoms of the nosebleeds? I guess, first of all, if you have fairly consistent nosebleeds, you probably should go do a little bit more research on that and see if you have HHT.
Jamie: Absolutely.
Interviewer: I could have it and not know it, right?
Jamie: Absolutely. The key there is once HHT is identified in a family in someone old enough to have the nosebleeds and the red spots on the skin and/or brain hemorrhage that leads to the diagnosis, to not let the evaluation stop there. When we have a patient come to our clinic and say it's a 50-year-old mother and grandmother, and we make the diagnosis of HHT, there's an evaluation we're going to do for her to make sure she doesn't have one of these hidden time bomb AVMs inside an internal organ. But, from our perspective, the whole family has become our patient. We're going to talk to her about her kids, her grandkids and what they should have in the way of testing.
At this point, thankfully, genetic testing for HHT is available. I can draw a blood sample on that 50-year-old mother/grandmother we just diagnosed with HHT and prove in her down at the genetic level what's causing her HHT, exactly which gene and which mutation in which gene is causing her HHT. Because it's different in each family with this disorder. But once I've pinpointed that in one member of the family, I know that anybody in that family that inherited the HHT will have that exact same mutation. So I can now test her kids and grandkids.
Interviewer: So the key is to think, "Huh, did Uncle Al have regular nosebleeds all the time? He did and he always complained about them. Hmm."
Jamie: Exactly. Exactly.
Interviewer: All right.
Jamie: But again, these are pieces of the puzzle that had to be put together in order to come up with a diagnosis. Often times, it requires looking at the whole family, not jus the individual in front of you.
Interviewer: Most of your patients, do they figure this out on their own or they have a doctor help them?
Jamie: It's a combination. Oftentimes, an astute physician suspects it originally, oftentimes in a member of the gamily that has a particular number of manifestations and then after having had that diagnosis floated to the patient by a primary care doc, the patient gets on the Internet, finds out that there actually are specialty centers and specialty clinics for this rare disorder and makes their way to either us or one of the other specialty centers.
Interviewer: That sounds like if you think you might have it, the next step for most people is to find the specialty center, like here at University of Utah Health Care. If somebody's looking for more information about HHT, do you have a resource that you recommend to somebody?
Jamie: Absolutely. There's a national group called CureHHT, formerly known as the HHT Foundation, that is a resource for patients and physicians alike, including a list of HHT centers of excellence nationally.
Announcer: TheScopeRadio.com is University of Utah Health Sciences Radio. If you like what you heard, be sure to get our latest content by following us on Facebook. Just click on the Facebook icon at TheScopeRadio.com.
Jamie:
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Internal Medicine grand rounds
Speaker
John J. Wysolmerski Date Recorded
April 07, 2016
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It may be unsettling to realize, but roughly…
Date Recorded
March 03, 2016 Science Topics
Health Sciences
Innovation Transcription
Interviewer: Eight percent of human DNA originally came from viruses. A new study published in "Science" reveals how our body is putting these viral remnant to work.
Announcer: Examining the latest research and telling you about the latest breakthroughs. The Science and Research Show is on The Scope.
Interviewer: I'm talking with the University of Utah Geneticists Dr. Cedric Feschotte and Ed Chuong, who've published a study in "Science" together with collaborator Nels Elde. Scientists for a while have known that some of our DNA comes from viruses. So I don't about you, but I actually find it kind of uneasy to think that I'm not just me, I'm part virus.
Dr. Feschotte: Eight percent of our genome is viruses, but then another 40% on top of that is actually other kinds of selfish genetic elements as well. So one might even say you're less human than you think. Definitely, a huge portion of the genome is represented by these kinds of selfish elements that most scientists often dust under the rug, so to speak.
Interviewer: What you've shown is that our body actually uses some of that foreign DNA for a very specific purpose. What did you find?
Ed: Yes, what we found is that some of these pieces of viral DNA being recycled to serve now some set of functions. Important for the defense of cells against pathogens including viruses.
Interviewer: How did the viral DNA get there in the first place?
Ed: There are remnants of past viral infections that have actually plagued our primate ancestors many, many millions of years ago. And they are descendants and they are been assimilated in the genome of the host and now what we are seeing still is that still some of these elements retain some of the properties, ancestral properties, regulatory properties of these viruses.
Interviewer: So tell me again what you think they're doing. How they're interacting with the rest of the defense system?
Dr. Feschotte: Your body has many ways to sense infection by virus or other kinds of microbes. And one of the first things that happen is that when you sense infections, cells will release, the signal, the warning signal called interferon. In the genomes of our cells there are hundreds of genes that are dedicated to fighting infection, fighting micros, fighting virus but they're normally turned off. Then what happens is when you have responses like the interferon response turned on, these cells sort of awaken from dormancy and then turn on and do their business and eventually sort of turn off. And what we found, basically, was that in addition to a lot of human DNA that gets activated by the signal, a lot of viral pieces are activated as well as thousands of viruses seem to be activated by the interferon response.
Interviewer: So these elements, these viral pieces are basically like triggers that help set off the immune weapons that they're sitting next to?
Dr. Feschotte: When we think about the switches, their original evolved function, so to speak, was to drive transcription of that virus. So I think, initially, 50 million years ago, that was the purpose. But clearly over time, some of these elements have been collocated or domesticated, you know there's different words for it by their host, in this case primates to act then exactly as you say, to act as switches that now instead of turning on viral genes, now they turn on genes that are pivotal for our own immune defenses.
Interviewer: Kind of the cool thing is that you're thinking of this as sort of a coordinated system.
Dr. Feschotte: You can imagine, no one protein is going to be enough against the pathogen. Our strategy is essentially the throw in hundreds of genes that together collectively make a very strong and robust defense system. And I mentioned earlier that the regulation of genes in response to interferon is governed by little molecular switches called regulatory elements. And our question was really, know how do these regulatory elements get there. How do they evolve in the first place? And one idea is that these regulatory elements can sort of evolve through mutation, the code necessary to turn on these genes or response interferon. But what we found was this potential mechanism where these endogenous retroviruses are actually providing these switches.
And what makes that mechanism so attractive is that these endogenous retroviruses have this built in ability to copy and paste themselves throughout the genome. And so if we are trying to think about how do you evolve a coordinative response? Well, it's a lot easier to take a pre bill switch provided by these viruses that are so common in the genome rather than to a sort of "rely" on random mutations to build these switches.
Ed: One reason why we think this mechanism of spreading these elements might be a good way to wire these networks and distribute these switches is that, indeed, the switches already existed. And again, they were serving probably viruses to begin with, but you didn't have to reinvent them.
Interviewer: Do you have evidence that this isn't a one-off thing? That this is happening kind of over and over throughout evolution and in different species too, right?
Ed: Yes, well, this was really another surprise that came kind of late into the study. And what we realized is that some of the elements that were similar are not identical. But very similar to the ones we would see in the human genome and in other primate genomes were actually also present in [inaudible] genome. Now a different location in the genome, but they had the same regulatory properties, it seems. That it contained some of these switches to respond to this infection, essentially. We see them present in multiple species and, indeed, we speculate that maybe the same mechanism has also spread some of these switches in other species to wire their own lineage-specific network of these immunity genes.
Interviewer: Do you think these viral DNA pieces might be impacting our health in other ways?
Ed: Yeah, so we think this is something really interesting that we need to follow up on. Because some of the genes that we found to regulated by this viral DNA have been implicated in cancer, autoimmune disease, they are themselves mis-regulating this disease. And we also know that some of this retroviral DNA is often activated in the same conditions. So now we've sort of connected the dots and are thinking that this provided mechanism can explain some of this mis-regulations of these genes in cancer and in autoimmune disease, but have been co-opted for a new regulatory function.
Announcer: Interesting, informative and all in the name of better health. This is The Scope Health Sciences Radio.
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At the heart of precision medicine is taking into…
Date Recorded
December 22, 2015 Science Topics
Health Sciences Transcription
Interviewer: Precision medicine is all about acknowledging that each of us is different, even our genetics. We'll talk about that more next on The Scope.
Announcer: Examining the latest research and telling you about the latest breakthroughs, the Science and Research Show is on The Scope.
Interviewer: I'm talking to Dr. Clement Chow, assistant professor of human genetics at the University of Utah. Give me an example of a particular disease that looks different in different people.
Dr. Chow: Cystic fibrosis is kind of the classic textbook example, and when you take these patients that have the same mutation in the CF gene, what you often see is that there's a lot of clinical differences in the way they manifest their disease, whether they get certain kinds of infections or whether different organs are affected. It can be quite variable between individuals that have the same disease causing mutation.
Interviewer: Why is that important to know and to acknowledge?
Dr. Chow: Right now, a lot of drug development is based on this idea that a certain disease, say, cancer or type II diabetes for example is the same in every individual. It targets a specific pathway, a response and it treats that pathway and response in every individual as if it's the same.
The problem is that that's not the case almost ever in any disease in any group of patients. So in order to think about more personalized therapies and personalized drugs, we need to understand how the genetic makeup of each individual affects how that disease is going to show up in those individuals and how that differs from this other group that has a different set of background genetic variance.
Interviewer: So when it comes to laboratory research, which is how we understand what causes disease and how to treat them, this kind of genetic diversity has largely been ignored, I would say. Why is that?
Dr. Chow: The typical genetic study or model of a genetic study in the lab is done on what's known as an inbred strain and the different fields, the Drosophila fly genetics field have adopted one or two standard genetic backgrounds.
Interviewer: So are they basically genetic clones of each other?
Dr. Chow: Yeah, so basically they are genetic clones, and that's one way of ensuring that the experiments are standardized and that we can make conclusions. They teach us a lot about physiology and the genetic disease but they don't really reflect the variation that's in a population.
Interviewer: So you're investigating how these differences can influence a particular disease called retinitis pigmentosa.
Dr. Chow: So retinitis pigmentosa is a retinal degeneration. It's a hereditary form of blindness. The cells in the retina begin to degenerate for different reasons depending on what type of retina pigmentosa you have.
Interviewer: And what did you find out about this disease in your lab?
Dr. Chow: We know when you look in the literature especially at the papers of studies looking at patients with retinitis pigmentosa, you see that there's a large amount of heterogeneity in the way that retinitis pigmentosa presents in those patients.
And so we thought we could take advantage of genetic variation in Drosophila, the fruit fly, to identify some of the modifier genes that might be driving these differences in the human population. So what we did was we took a model on retinitis pigmentosa in the fly and crossed it on to 200 genetic backgrounds and what that does is it captures variation that's existent in a population, variation that we know is present in living organisms.
Once we cross this mutation on to the 200 backgrounds, we basically found that retinal variation was incredibly variable between these 200 strains, basically ranging from almost completely degenerated retina to almost no degeneration. And so this is quite striking because it's the same mutation on 200 different backgrounds, 200 different individuals and you get basically 200 different versions of the disease.
So then we used that variability to identify the modifier genes using a genetic mapping strategy, and we identified a really nice lists of modifier genes that haven't really been implicated in the retinitis pigmentosa before.
Interviewer: So what kinds of modifier genes? It's hard to imagine what it could be that's making that the disease look so different in different strains.
Dr. Chow: Right, at the heart of retinitis pigmentosa is the death of the retina cells, and we do find a large number of genes that are involved in cell depth which is what's driving these retina cells to die ultimately. What's interesting is that these are genes involved in cell death or apoptosis that aren't typically thought of as the main players in the pathway. And so probably because variation can't really change the main players of any particular pathway too much without hurting the organism, so it can tolerate variation in these peripheral members but maybe not in the main members. And that's what we are finding with natural variation is that oftentimes variation comes from these less important players.
Interviewer: Yeah, that's interesting.
Dr. Chow: Rather than the main drivers of that response in the organism.
Interviewer: Do you have any idea at this point whether any of the modifiers you found in your screens are also seen in people?
Dr. Chow: We don't know yet whether they're modifying disease in humans, but we are collaborating with the group to look at sequences from patients that have mutation in retinitis pigmentosa genes to see if any of these . . . if there are mutations in any of these modifier genes in the background that might be modifying their disease, so that work is undergoing now.
Interviewer: So why is it important to do this type of work?
Dr. Chow: Personalized therapies are dependent on this idea that people are different, that everyone's genetics is a little different and this drives disease differences. So we hope that by studying genetic variation in model organisms we have this nice controlled way to start breaking down some of these effects, which are much more difficult to do in a human population. And so we think that we can make some progress using model organisms this way.
Interviewer: NIH has a push now to make sure that labs do research on female as well as male cells or animals or whatever it is. Do you think this type of work is kind of the next wave?
Dr. Chow: I think that people are becoming more and more attuned to these kinds of differences, though I think that there's also a lot of resistance to it because it complicates the laboratory setting. It makes it harder to make firm conclusions, which is what science is so used to, but there really aren't any firm conclusions in science.
Announcer: Interesting, informative and all in the name of better health. This is The Scope Health Sciences Radio.
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The upcoming Will Smith movie…
Date Recorded
December 21, 2015 Health Topics (The Scope Radio)
Brain and Spine Transcription
Announcer: Medical News and Research from University Utah Physicians and Specialists you can use, for a happier and healthier life. You're listening to The Scope.
Interviewer: The Will Smith movie "Concussion" focuses on a condition called Chronic Traumatic Encephalopathy. Dr. Colby Hansen is from the University of Utah Orthopedic Center Concussion Clinic. Dr. Hansen, tell me about this condition.
Dr. Hansen: Well, I think in general there's still so much for us as a scientific community and as a medical community to understand about this entity that is highlighted in the movie, chronic traumatic encephalopathy. I mean, it seems pretty clear that trauma is a common denominator, but we don't know to what degree genetics may play into this, to what degree other types of issues may play into it, either mental health disorders or whatnot. We don't know at what amount of exposure to trauma people are put at risk. Just frankly, there's a lot to tease out before we start being over-reactionary and pulling the plug on sports and things of that nature.
Interviewer: The condition that they're talking about in the movie, what exactly is that?
Dr. Hansen: Chronic traumatic encephalopathy is really a diagnosis that can only be made postmortem or after death by autopsy. What some of these researchers are seeing are abnormal collections of clumps of protein called tau that has also been linked to other degenerative diseases like Alzheimer's dementia. They've seen these under the microscope of some of these former athletes, and there's really no denying that they've seen this. So now they're in a phase of trying to characterize are there maybe certain areas of the brain where you get this kind of collection more than others, to what degree does this correlate with known behaviors or symptoms that the patient was experiencing while they were alive, and then ultimately trying to make the link back to the sport or the activity that they were engaged in. People would generally feel or believe that not every football player who progressed through to the NFL has this disorder, so who does and who doesn't and what are the differentiating factors between who does and who doesn't.
Interviewer: Do people that don't play football develop this disease?
Dr. Hansen: At least in terms of the case series, the group at Boston led by Dr. Ann McKee, who's a neuro pathologist there, has studied the most brains and they are not exclusively football players. This disorder was originally described many, many years ago, many decades ago, in boxers, and was termed Dementia Pugilistica which literally means "boxer's dementia." We would assume that the common denominator is trauma, but we don't know much beyond that. How much trauma, at what age the trauma occurred, there's even a lot of debate now not in just concussions, but just the repeated impacts that don't necessarily produce a clear, observable concussion.
At the end of the day there is so much for us to learn, to understand, about not only the impacts of a single concussion and how is the best way to manage it, how is the best way to assess it, but of course the long-term ramifications of concussions and repeated concussions in the health of our athletes and anybody who's active.
Announcer: TheScopeRadio.com is University of Utah Health Sciences Radio. If you like what you heard, be sure to get our latest content by following us on Facebook. Just click on the Facebook icon at TheScopeRadio.com.
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Polycystic ovary syndrome (PCOS) is the leading…
Date Recorded
September 08, 2015 Health Topics (The Scope Radio)
Womens Health
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For over fifty years, University of Utah has been…
Date Recorded
July 06, 2015 Science Topics
Health Sciences Transcription
Interviewer: A glimpse into the history of the Utah Genome Project, up next on The Scope.
Announcer: Examining the latest research and telling you about the latest breakthroughs, the Science and Research Show is on The Scope.
Interviewer: I'm talking with Dr. Ray Gesteland, emeritus professor of Human Genetics at the University of Utah. Emeritus. I guess that means you've been around a while.
Dr. Gesteland: I've been around a long time.
Interviewer: When did you start at the University of Utah?
Dr. Gesteland: I came here in 1978.
Interviewer: What was it that brought you to Utah from the East coast, I believe, right?
Dr. Gesteland: So I had been at Cold Spring Harbor Laboratory, hot bag of genetics and molecular biology for about 11 years. Jim Watson was the director of that institution. And I worked with him as assistant director and had not known much of anything about Utah.
And then two things happened that made my ears perk up. One was Mario Capecchi, who I had worked with as a graduate student years ago. Had made the decision to move to Utah, and he was leaving Harvard to go to Utah. So that told me something special must be happening there because I had great respect for him. John Roth spent a sabbatical year in my laboratory at Cold Spring Harbor, a very smart geneticist from Berkeley, and he was moving to Utah. And I said, "If those two guys are going to Utah, there must be something really unusual going on."
Then I had the opportunity to come out here and look at a job, and it was love at first sight. Staying at the Alta Lodge, looking at High Rustler in the springtime was hard to turn down. But it was really the genetics opportunity, when I saw what the genetic resources were here.
Interviewer: And what were those resources?
Dr. Gesteland: Well, it was mostly people, a great bunch of people who are at Utah with the idea of doing long-term projects that would be hard to do many places, where quick return is expected. And there was the Mormon genealogical database, which I really didn't know much about, but realized this has got to be important for the future of understanding genes in humans.
But I think it was the style of the place more than anything else that really appealed to me. That the guy down the hall is a colleague, not a competitor, and he's someone you can do things with, collaborate with, made it very appealing.
Interviewer: And what was it like then?
Dr. Gesteland: There was already a genetics effort going on here and really goes back to some of the early founders. George Cartwright, Frank Tyler, Max Wintrobe, Eldon Gardner, who saw the opportunity of pursuing genetics long before any of this technology came along, partly because of the unique resources here in Utah.
In fact, the very first research grant that the National Institutes ever gave out, the only one at the beginning in 1945, came to Utah to Frank Tyler to study a family with muscle disease. He had assembled a huge family with many, many members, some of who had the disease, some of who didn't. And he got this $300,000 grant from NIH to begin to study that family. So that goes back to 1945.
Interviewer: Yeah, that's amazing.
Dr. Gesteland: And then Mark Skolnick came in 1974, I believe, to begin to computerize the genealogical database. That was really started by a planning grant for cancer research from NIH. And the thought was that if we could get the genealogical records in a computer database, we could begin to search and assemble families that would be useful to study for understanding their genetics.
Interviewer: And that's what's called the Utah Population Database today.
Dr. Gesteland: And then it built from there. When the human genetics department was founded with Ray White and I as the initial leaders. That is building on a base that was already here.
Interviewer: Really the seeds of all this is the unique population that's here in Utah, I imagine. The fact that they keep detailed records on their ancestry and have large families.
Dr. Gesteland: Yeah. So I think it's more than that. The population has a real innate interest in genetics. They're interested in their heritage, their families, and keeping track of that. Plus, they're very willing to be involved in studies. You go to a family that might have a disease you wanted to look at and ask people to participate in the study, 95% of the people will sign up and say, "Terrific. Here's 10 little liters of blood. Let's see what you can do." That's very different than other places in the country.
But the value of that large database has taken on even greater meaning just in the last few years. The hope was that just by looking at large numbers of people with different diseases, you could find all the genes that cause disease. All that turned out to be not so simple because many genes are involved in most diseases. So if you would take some common disease, say, high blood pressure, you can find a thousand different genes, each of which contribute some small amount to that predisposition to high blood pressure.
Well it turns out, scanning the population at large for those genes and figuring it out just doesn't work. What works is to identify families and sequence genomes of five or six people from one family, some of whom have the disease, some of them don't. That's the way you'll find the specific genes involved in that family and then by extension to other families. So the family structure has become absolutely crucial now, for the next stage of finding genes involved in the predisposing to human disease.
Interviewer: That's what is becoming the precision in medicine initiative today.
Dr. Gesteland: Precision medicine, personalized medicine, whatever you want to call it, but it's here. It's got a long way to go, but it's going to be a fun ride to watch.
Announcer: Interesting, informative, and all in the name of better health. This is The Scope Health Sciences Radio.
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Date Recorded
September 29, 2011
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Speaker
Stephanie Romero Date Recorded
February 28, 2013
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Our genetic code is made up of 3.3 billion base…
Date Recorded
January 15, 2014 Health Topics (The Scope Radio)
Cancer
Family Health and Wellness Science Topics
Health Sciences Transcription
Announcer: Examining the latest research and telling you about the latest breakthroughs. The Science and Research Show is on The Scope.
Interviewer: Just one tiny change within our vast genetic code can put someone at risk for developing disease. Using a unique resource, the Utah Population Database, University of Utah professor Nicki Camp has made headway into finding the variations that trigger inherited cancers, including multiple myeloma. Dr. Camp, what's multiple myeloma and why is it important to study?
Nicki: Multiple myeloma is a cancer of the plasma cells and your bone marrow. Until recently it was one of the cancers that had the shortest survivals so we've been trying to figure out ways in which we can both diagnose and maybe understand the disease a little better so we could develop new treatments and therapies for myeloma.
Interviewer: What is your approach to identifying the genetic variations behind this disease?
Nicki: Our specific way of doing this, and we do this for many cancers, is to try and study families where they have an increased rate of, in this case, myeloma because the idea is that if we can see it clustering in a family and we study that family, that that's more likely to be due to genetics. So we've increased our chance to be able to find those underlying genetic factors.
Interviewer: As I understand it, you use the Utah Population Database. Can you describe that resource?
Nicki: Yeah. It's actually an amazing resource, one of the reasons why I'm here in Utah. The two key factors that I'm using for my multiple myeloma resource are, one, the genealogy. In other words, kind of how people and their parents and their grandparents are all linked together in genealogical records. There's about two-and-a-half million people who we know at least three generations of their genealogy in the UPDB. We have that back to the pioneers.
Then what we have on top of that is a mandated Utah Cancer Registry. The cancer registry has been in place since the late '60s and every cancer that's diagnosed or treated primary cancer in the state of Utah goes into that registry. If you can imagine looking in front of you at a genealogy, like an enormous family tree, and then throwing cancer diagnoses on there, suddenly you can just see these constellations of cancers.
Based on that, without asking anybody to recall their family history, we can identify these families which look extremely powerful to be able to study and then through a mechanism that's in place at the Utah Cancer Registry, because of course I don't know who these people are, I can say here's a family I would really like to study. Then they invite those people. They say, "Nicky Camp at the university would like you to be part of one of her studies." If they say, "Yeah, that sounds great," then we get their contact details and we invite them into the study.
That mechanism is, I think, a very unique one. In fact, precisely because myeloma had such a short survival rate there's been a real struggle in the field as a whole of being able to study families because people have passed away, whereas what we've been able to do is identify them and then go straight to the people who fortunately are still living. Actually, that's the other great thing about Utah. So many people are very willing to be part of genetic studies too, so we get a very high participation rate. We have probably some of the largest and well filled out pedigrees that there in myeloma in the world.
Interviewer: That's amazing. Have you identified a number of families?
Nicki: We have. We have identified and enough people have participated in 15 different extended pedigrees. Eleven of those pedigrees are part of my Utah genome project.
Interviewer: Basically, you're taking a closer look at the DNA sequences within just these pedigrees?
Nicki: Yes. First, a lot of projects that are out there in cancer are to do with taking an independent set of cases and an independent set of controls, no family structure, and they will say, for example, sequence these two and say, okay, what are those variants that the cases seem to have more often than the controls do? That has good power.
That works very well if what you're looking for is quite common. It doesn't work so well if what you're looking for is quite rare. You can have a thousand cases and a thousand controls. If you see it three times in your cases and zero times in your controls, what does that mean? Is that a real difference? Is that just an anomaly of three versus zero?
The advantage of doing it in pedigrees is you're expecting to see that very same mutation or base change to be carried by these people who will have a common ancestor. So the strategy that we have taken is first of all, we kind of do this ladder of genotypes across the whole genome and we do that to try and understand which chunks of chromosomes look like they're being shared more often than they should.
Interviewer: I see.
Nicki: So that gives us some focus because what you've got to remember, as I said in the beginning, 3.3 billion faces, where should I look? Of course, it's all statistics and sometimes statistics tell you the wrong thing so we still have the sequencing everywhere else, but it gives us a way in which we can kind of make sensible roots through these enormous datasets.
Interviewer: Do you have some leads or have you narrowed down regions of interest?
Nicki: What we're really excited to find is we've got 10 really exciting regions of which five are either regions which have been shown in this case controlled type analysis, so the nice thing is they're overlapping with what's known from totally different study designs. A couple of the regions are known somatic sites of translocation.
In other words, what we're studying is what is in your inherited DNA that might predispose you to disease? Well, once these people get disease and you have a cancer cell then the cancer cell starts making changes of its own. Some of those are unique to the cancer, so what we know is that if you look at the tumor cells in myeloma there are certain chromosomes where pieces of one chromosome translocate and move elsewhere. On those boundaries where those translocations happen we seem to be finding some germ line, some inherited changes that appear to be happening in those same regions.
So, again, that's very intriguing that maybe there's some maybe genetic predisposition as to why those translocations might happen. Anyway, they kind of make all of these pieces of cancer biology and what other parts of the fields are doing with cases and controls, they kind of help us put our work in perspective, what's more likely to be real versus, like I said, something that's just coming out of the background noise and isn't a real signal.
Interviewer: If that connection is made and makes sense, what can be done with that information?
Nicki: I guess my hope would be many levels. To start with, just basically, we understand the disease mechanism better. Then that gives us insight into the disease and that might give us reasons to figure out different treatments strategies.
If we know something is going to predispose someone to a disease we can screen them quicker. We can start treatments earlier; we can elongate their life that way. We might suddenly understand how the genes are acting, reacting in inappropriate ways and maybe that's going to give us better ideas of drug targets or how a drug that's already used in, say, another cancer could be used specifically here.
Interviewer: I imagine much of your work is done at the computer. How does it feel to have this connection with real lives?
Nicki: It's thrilling and it's also frightening. I have coordinators that actually go out and draw the blood, talk to the patients, and I am most of the time sitting in front of a computer and these are numbers. To think that we might be able to make a difference in these people's lives is really thrilling.
Frightening because in some ways you just feel like there's so much at stake, especially for the people involved. These things take such a long time. In some ways I wish there was something in the short-term that we could give back to these people which participate, which usually we can't. Usually these are studies that take five, 10, 15 years. It takes a while to go from initial findings to realizing how significant that is for it to get back into the clinic.
Interviewer: I think something to emphasize is that your work will impact more than Utahns.
Nicki: Yeah. Actually, it's a really important point. Again, I suppose the excellent examples of this are the breast cancer genes, BRCA1 and 2, and things like P16, and myeloma, and APC gene in colorectal cancer. The genes that have been found here in Utah have all had complete relevance in other populations.
In fact, many of the genes and the variants identified here in Utah are among the top ones that have been part of the genetic counseling that have moved on. So, yeah, it certainly isn't just that what we find here is relevant here. They've been relevant across the United States and also worldwide.
Interviewer: Tell us how you got here and why you decided to stay.
Nicki: I arrived in 1998. I had just finished my postdoc in the central north of England at a place called Sheffield. My idea was to come for 18 months to come and see what this Utah Population Database was about. Here I am 15 years later married to a Utahn and two kids. I've never looked back. Now it would be really difficult to ever leave because there's just so much more we can do here. If you want to do pedigree studies it really is just the best place.
Announcer: Interesting, informative, and all in the name of better health. This is The Scope Health Sciences Radio.
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